3NTQ
Crystal structure of K97V mutant myo-inositol dehydrogenase from Bacillus subtilis with bound cofactor NAD
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-06-16 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97934 |
Spacegroup name | I 21 3 |
Unit cell lengths | 184.387, 184.387, 184.387 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.883 - 2.600 |
R-factor | 0.2315 |
Rwork | 0.230 |
R-free | 0.26580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3NT2 (holo-IDH) |
RMSD bond length | 0.009 |
RMSD bond angle | 1.165 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.9.8.0L) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.5_2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.883 | 19.880 | 2.690 |
High resolution limit [Å] | 2.600 | 5.570 | 2.600 |
Rmerge | 0.092 | 0.049 | 0.856 |
Total number of observations | 19890 | 20279 | |
Number of reflections | 31891 | ||
<I/σ(I)> | 8 | 24.8 | 1.6 |
Completeness [%] | 99.5 | 96 | 100 |
Redundancy | 6.5 | 6.2 | 6.36 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.4 | 298 | 0.1M tri-sodium citrate pH 5.4, 2.6M ammonium sulfate, microbatch, temperature 298K |