3NT2
Crystal structure of myo-inositol dehydrogenase from Bacillus subtilis with bound cofactor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-03-21 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.97934 |
Spacegroup name | I 21 3 |
Unit cell lengths | 184.368, 184.368, 184.368 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.036 - 2.300 |
R-factor | 0.24 |
Rwork | 0.240 |
R-free | 0.28640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3MZ0 (apo-IDH) |
RMSD bond length | 0.004 |
RMSD bond angle | 0.782 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.7L) |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 22.040 | 22.040 | 2.380 |
High resolution limit [Å] | 2.300 | 4.940 | 2.300 |
Rmerge | 0.103 | 0.065 | 0.739 |
Total number of observations | 39704 | 36895 | |
Number of reflections | 45289 | ||
<I/σ(I)> | 9.5 | 27.3 | 1.7 |
Completeness [%] | 98.1 | 82.4 | 100 |
Redundancy | 11.18 | 9.82 | 8.01 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 5.4 | 298 | 0.1M tri-sodium citrate pH 5.4, 2.6M ammonium sulfate, microbatch, temperature 298K |