3NEP
1.55A resolution structure of malate dehydrogenase from Salinibacter ruber
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-09-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9797 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 76.110, 87.720, 100.450 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.036 - 1.551 |
R-factor | 0.1691 |
Rwork | 0.168 |
R-free | 0.19170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1guz |
RMSD bond length | 0.013 |
RMSD bond angle | 1.333 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.6_288)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.900 | 1.600 |
High resolution limit [Å] | 1.550 | 1.550 |
Rmerge | 0.083 | 0.499 |
Number of reflections | 47819 | |
<I/σ(I)> | 11.39 | 2.23 |
Completeness [%] | 97.7 | 93.2 |
Redundancy | 6.36 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 298 | 1M LiCl, 0.1M Citric Acid, 10% PEG 6000, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 298 | 1M LiCl, 0.1M Citric Acid, 10% PEG 6000, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 298 | 1M LiCl, 0.1M Citric Acid, 10% PEG 6000, pH 4.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |