Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3NDS

Crystal structure of engineered Naja Nigricollis toxin alpha

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyCCD
Collection date2006-03-10
DetectorADSC QUANTUM 315
Wavelength(s)0.9794913
Spacegroup nameP 43 21 2
Unit cell lengths40.666, 40.666, 72.197
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.755 - 1.200
R-factor0.1718
Rwork0.170
R-free0.19850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1iq9
RMSD bond length0.014
RMSD bond angle2.499
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwarePHENIX ((phenix.refine))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.83040.8301.260
High resolution limit [Å]1.2003.7901.200
Rmerge0.0680.0350.646
Number of reflections19396
<I/σ(I)>28.167.83.3
Completeness [%]98.894.793.9
Redundancy13.311.48.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.529325 mg/ml toxin alpha-62 mutant lyophilized (2mg resuspende in 80 l 50mM sodium acetate, pH 4.25, 0.02% NaN3. precipitant: 1.8M A.S., 5% MPD, 80mM Na citrate, VAPOR DIFFUSION, SITTING DROP, temperature 293K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon