3N92
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | LNLS BEAMLINE W01B-MX2 |
Synchrotron site | LNLS |
Beamline | W01B-MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-02-10 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.4586 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.762, 82.735, 111.899 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 66.530 - 2.890 |
R-factor | 0.22379 |
Rwork | 0.220 |
R-free | 0.30517 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ufa |
RMSD bond length | 0.012 |
RMSD bond angle | 1.409 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 66.530 | 2.960 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.087 | 0.577 |
Number of reflections | 13850 | |
<I/σ(I)> | 16.8 | 2.4 |
Completeness [%] | 91.7 | 90.1 |
Redundancy | 5.3 | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 100 mM sodium acetate (pH 5.5), 15% (w/v) PEG 8000, 10% (v/v) PEG 400 and 200 mM sodium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 291K |