3MXH
Native structure of a c-di-GMP riboswitch from V. cholerae
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | NSLS BEAMLINE X29A |
| Synchrotron site | NSLS |
| Beamline | X29A |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2009-08-26 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 1.1 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 50.243, 45.652, 80.248 |
| Unit cell angles | 90.00, 93.74, 90.00 |
Refinement procedure
| Resolution | 30.340 - 2.300 |
| R-factor | 0.20342 |
| Rwork | 0.202 |
| R-free | 0.23913 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3irw |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.936 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 80.000 | 2.400 |
| High resolution limit [Å] | 2.300 | 2.300 |
| Rmerge | 0.073 | 0.528 |
| Number of reflections | 15201 | |
| <I/σ(I)> | 14.6 | 2.1 |
| Completeness [%] | 97.4 | 89.9 |
| Redundancy | 5.3 | 4.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 22% PEG550mme, 50 mM MES, pH 6.0, 5 mM MgSO4, 300 mM NaCl, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
