3MVV
Crystal structure of Staphylococcal nuclease variant Delta+PHS F34A at cryogenic temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-01-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0080 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 30.577, 61.163, 38.620 |
Unit cell angles | 90.00, 92.52, 90.00 |
Refinement procedure
Resolution | 38.580 - 1.720 |
R-factor | 0.187 |
Rwork | 0.182 |
R-free | 0.23000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3BDC with all H2O Ca2+ and THP removed and the following truncations: H8A T13A Q30A F34A K64A T82A Y113A V114A Y115A; all b-factors were reset to 20. |
RMSD bond length | 0.016 |
RMSD bond angle | 1.581 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.1.3) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.750 |
High resolution limit [Å] | 1.720 | 4.670 | 1.720 |
Rmerge | 0.058 | 0.040 | 0.280 |
Number of reflections | 15190 | ||
<I/σ(I)> | 16.8 | ||
Completeness [%] | 99.7 | 96.9 | 99.9 |
Redundancy | 7.3 | 6.9 | 6.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 277 | 25% MPD, 25 mM Potassium Phosphate, Calcium Chloride, pdTp, pH 9.0, vapor diffusion, hanging drop, temperature 277K |