3MHB
Crystal structure of Staphylococcal nuclease variant Delta+PHS L38A at cryogenic temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-01-25 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.1000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 31.040, 60.576, 38.165 |
Unit cell angles | 90.00, 93.29, 90.00 |
Refinement procedure
Resolution | 30.990 - 1.550 |
R-factor | 0.193 |
Rwork | 0.188 |
R-free | 0.23800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3BDC with all H2Os Ca2+ and THP removed and the following truncations: H8A T13A Q30A L36A L37A L38A K64A D77A T82A Y91A Y113A V114A Y115A and N118A; all b-factors were reset to 20. |
RMSD bond length | 0.024 |
RMSD bond angle | 2.217 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.1.3) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.000 | 60.000 | 1.580 |
High resolution limit [Å] | 1.550 | 4.210 | 1.550 |
Rmerge | 0.052 | 0.034 | 0.282 |
Number of reflections | 20512 | ||
<I/σ(I)> | 17.2 | ||
Completeness [%] | 99.2 | 96.2 | 92.9 |
Redundancy | 6.9 | 6.9 | 5.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 277 | 25% MPD, 25 mM Potassium Phosphate, Calcium Chloride, pdTp, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K |