3LYC
Crystal structure of Putative pectinase (YP_001304412.1) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-07-09 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91837,0.97926,0.97882 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.116, 104.606, 393.587 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.507 - 2.300 |
R-factor | 0.246 |
Rwork | 0.244 |
R-free | 0.28000 |
Structure solution method | MAD |
RMSD bond length | 0.012 |
RMSD bond angle | 0.770 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.507 | 49.507 | 2.380 |
High resolution limit [Å] | 2.300 | 4.930 | 2.300 |
Rmerge | 0.114 | 0.061 | 0.663 |
Number of reflections | 186629 | 20160 | 16841 |
<I/σ(I)> | 8.64 | 18.6 | 1.8 |
Completeness [%] | 97.3 | 99.5 | 90.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 40.0000% Ethanol, 0.1170M magnesium chloride, 0.1M TRIS pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K |