3KY8
Crystal structure of Putative riboflavin biosynthesis protein (YP_001092907.1) from SHEWANELLA SP. PV-4 at 2.12 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL11-1 |
Synchrotron site | SSRL |
Beamline | BL11-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-07-09 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91837,0.97917,0.97870 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 72.679, 72.679, 156.974 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.029 - 2.120 |
R-factor | 0.184 |
Rwork | 0.181 |
R-free | 0.23100 |
Structure solution method | MAD |
RMSD bond length | 0.016 |
RMSD bond angle | 1.590 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELX |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.029 | 30.029 | 2.200 |
High resolution limit [Å] | 2.120 | 4.550 | 2.120 |
Rmerge | 0.096 | 0.029 | 0.948 |
Number of reflections | 24676 | 4615 | 4765 |
<I/σ(I)> | 11.7 | 37.9 | 1.5 |
Completeness [%] | 99.6 | 99.4 | 99.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 277 | 0.5000M (NH4)2SO4, 1.0000M Li2SO4, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |