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3KDP

Crystal structure of the sodium-potassium pump

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyCCD
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)1.078
Spacegroup nameP 21 21 21
Unit cell lengths68.930, 261.500, 334.780
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.858 - 3.500
R-factor0.2431
Rwork0.242
R-free0.28620
Structure solution methodMIR
RMSD bond length0.010
RMSD bond angle1.433
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHARP
Refinement softwarePHENIX ((phenix.refine: 1.5_2))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.0003.600
High resolution limit [Å]3.5003.500
Rmerge0.2580.120
Number of reflections77431
<I/σ(I)>13.82.56
Completeness [%]99.8
Redundancy13.81.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION729214% PEG 2000 MME, 0.2M CHOLINE CHLORIDE, 4% GLYCEROL, 4% MPD, 0.04M DTT, 0.1-04% BETA-DDM, pH 7.0, VAPOR DIFFUSION, temperature 292K

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PDB entries from 2024-05-15

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