3HZK
Crystal structure of S73-2 antibody in complex with antigen Kdo(2.4)Kdo
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-002+ |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2007-11-24 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.340, 80.940, 128.160 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.752 - 2.150 |
R-factor | 0.217 |
Rwork | 0.214 |
R-free | 0.26000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1Q9R |
RMSD bond length | 0.006 |
RMSD bond angle | 1.065 |
Data reduction software | d*TREK |
Data scaling software | d*TREK (9.4SSI) |
Phasing software | PHASER (2.1.1) |
Refinement software | PHENIX (1.4_4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.860 | 19.860 | 2.230 |
High resolution limit [Å] | 2.150 | 4.610 | 2.150 |
Rmerge | 0.061 | 0.034 | 0.296 |
Total number of observations | 11909 | 12248 | |
Number of reflections | 25575 | ||
<I/σ(I)> | 27.4 | 3.8 | |
Completeness [%] | 94.9 | 88.6 | 98.2 |
Redundancy | 4.73 | 4.59 | 4.66 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 298 | PEG 4000, Ethylene glycol, ZnCl2, MgCl2, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |