3HYO
Crystal structure of pyridoxal kinase from Lactobacillus plantarum in complex with ADP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X12C |
Synchrotron site | NSLS |
Beamline | X12C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-06-14 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.979 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 64.594, 69.761, 132.924 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.060 - 1.850 |
R-factor | 0.18208 |
Rwork | 0.180 |
R-free | 0.22219 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3h74 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.478 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.060 | 1.897 |
High resolution limit [Å] | 1.850 | 1.849 |
Rmerge | 0.050 | 0.313 |
Number of reflections | 24694 | |
<I/σ(I)> | 13.5 | 6.8 |
Completeness [%] | 99.8 | 100 |
Redundancy | 9 | 7.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.2M MgCl2, 0.1M HEPES pH 6.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K |