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3GO3

Interactions of an echinomycin-DNA complex with manganese(II) ions

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyCCD
Collection date2008-05-23
DetectorMARMOSAIC 225 mm CCD
Spacegroup nameP 41 21 2
Unit cell lengths26.544, 26.544, 162.129
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.100
R-factor0.162
R-free0.19600
Structure solution methodSAD
RMSD bond length0.017
RMSD bond angle0.033
Data reduction softwareXDS
Data scaling softwareSADABS
Phasing softwareSHELXD
Refinement softwareSHELXL-97
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.200
High resolution limit [Å]1.1001.100
Rmerge0.0330.202
Number of reflections23140
<I/σ(I)>24.064.44
Completeness [%]92.276.5
Redundancy5.22.17
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1624% V/V PEG 200, 6% W/V PEG 3350, 16MM MANGANESE(II) CHLORIDE, 20MM SPERMINE TETRACHLORIDE, 0.1M MES BUFFER (PH 6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
1624% V/V PEG 200, 6% W/V PEG 3350, 16MM MANGANESE(II) CHLORIDE, 20MM SPERMINE TETRACHLORIDE, 0.1M MES BUFFER (PH 6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
1624% V/V PEG 200, 6% W/V PEG 3350, 16MM MANGANESE(II) CHLORIDE, 20MM SPERMINE TETRACHLORIDE, 0.1M MES BUFFER (PH 6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111PEG 200
1012spermine tetrachloride
1112MES
1212H2O
211PEG 3500
311manganese(II) chloride
411spermine tetrachloride
511MES
611H2O
712PEG 200
812PEG 3500
912manganese(II) chloride

220113

PDB entries from 2024-05-22

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