3GO3
Interactions of an echinomycin-DNA complex with manganese(II) ions
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-05-23 |
Detector | MARMOSAIC 225 mm CCD |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 26.544, 26.544, 162.129 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.000 - 1.100 |
R-factor | 0.162 |
R-free | 0.19600 |
Structure solution method | SAD |
RMSD bond length | 0.017 |
RMSD bond angle | 0.033 |
Data reduction software | XDS |
Data scaling software | SADABS |
Phasing software | SHELXD |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 1.200 |
High resolution limit [Å] | 1.100 | 1.100 |
Rmerge | 0.033 | 0.202 |
Number of reflections | 23140 | |
<I/σ(I)> | 24.06 | 4.44 |
Completeness [%] | 92.2 | 76.5 |
Redundancy | 5.2 | 2.17 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 6 | 24% V/V PEG 200, 6% W/V PEG 3350, 16MM MANGANESE(II) CHLORIDE, 20MM SPERMINE TETRACHLORIDE, 0.1M MES BUFFER (PH 6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K | ||
1 | 6 | 24% V/V PEG 200, 6% W/V PEG 3350, 16MM MANGANESE(II) CHLORIDE, 20MM SPERMINE TETRACHLORIDE, 0.1M MES BUFFER (PH 6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K | ||
1 | 6 | 24% V/V PEG 200, 6% W/V PEG 3350, 16MM MANGANESE(II) CHLORIDE, 20MM SPERMINE TETRACHLORIDE, 0.1M MES BUFFER (PH 6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | PEG 200 | ||
10 | 1 | 2 | spermine tetrachloride | ||
11 | 1 | 2 | MES | ||
12 | 1 | 2 | H2O | ||
2 | 1 | 1 | PEG 3500 | ||
3 | 1 | 1 | manganese(II) chloride | ||
4 | 1 | 1 | spermine tetrachloride | ||
5 | 1 | 1 | MES | ||
6 | 1 | 1 | H2O | ||
7 | 1 | 2 | PEG 200 | ||
8 | 1 | 2 | PEG 3500 | ||
9 | 1 | 2 | manganese(II) chloride |