Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3F3B

Structure of the phage-like element PBSX protein xkdH from Bacillus Subtilus. Northeast Structural Genomics Consortium target SR352.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X4A
Synchrotron siteNSLS
BeamlineX4A
Temperature [K]100
Detector technologyCCD
Collection date2008-08-14
DetectorADSC QUANTUM 4
Spacegroup nameP 65 2 2
Unit cell lengths42.661, 42.661, 283.650
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution19.970 - 2.500
R-factor0.23
Rwork0.230
R-free0.26300
Structure solution methodSAD
RMSD bond length0.006
RMSD bond angle1.600
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareSnB
Refinement softwareCNS (1.2)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.590
High resolution limit [Å]2.5002.500
Rmerge0.0470.117
Number of reflections9878
<I/σ(I)>49.316.9
Completeness [%]98.396.4
Redundancy106
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52770.55M NaH2PO4, 0.5M KH2PO4, 0.08M Hepes-Na, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K

231029

PDB entries from 2025-02-05

PDB statisticsPDBj update infoContact PDBjnumon