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3E5H

Crystal Structure of Rab28 GTPase in the Active (GppNHp-bound) Form

Replaces:  2HY4
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-D
Synchrotron siteAPS
Beamline14-BM-D
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorMAR scanner 345 mm plate
Wavelength(s)1.0
Spacegroup nameP 41 21 2
Unit cell lengths79.747, 79.747, 66.977
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution28.794 - 1.499
R-factor0.153
Rwork0.151
R-free0.18100
Starting model (for MR)2hxs
RMSD bond length0.007
RMSD bond angle1.202
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHENIX
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.550
High resolution limit [Å]1.5001.500
Rmerge0.0800.321
Number of reflections35232
<I/σ(I)>47.110
Completeness [%]99.999.8
Redundancy19.214.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529320% PEG 3350, 100 mM NaCl, 100 mM potassium acetate, 5% glycerol, 20 mM HEPES, pH 7.50, 2mM MgCl2, vapor diffusion, hanging drop, temperature 293.0K

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PDB entries from 2024-05-15

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