Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DQD

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1250 Atmospheres Number 2: Structure 12 in a Series of 26 High Pressure Structures

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F2
Synchrotron siteCHESS
BeamlineF2
Temperature [K]100
Detector technologyCCD
Collection date2005-11-05
DetectorADSC QUANTUM 210
Wavelength(s)0.9795
Spacegroup nameP 21 21 21
Unit cell lengths51.193, 62.977, 71.128
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.400
R-factor0.21605
Rwork0.213
R-free0.28004
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1HUY WITH RESIDUE 80 MUTATED TO GLUTAMINE
RMSD bond length0.025
RMSD bond angle2.251
Data reduction softwareDPS
Data scaling softwareSCALA (3.2.25)
Phasing softwareMOLREP
Refinement softwareREFMAC
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.720
High resolution limit [Å]1.4001.400
Rmerge0.0640.303
Number of reflections27256
<I/σ(I)>10.32.5
Completeness [%]59.3100
Redundancy4.64.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5277Crystals grown by seeding using a Seed Bead (HR2-320, Hampton Research) in 5% PEG 3350, 50 mM Na Acetate, 50 mM NH4 Acetate, pH 5.0. Crystals were grown at 4 deg C and at ambient pressure, VAPOR DIFFUSION, HANGING DROP, temperature 277K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon