3DMS
1.65A crystal structure of isocitrate dehydrogenase from Burkholderia pseudomallei
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-04-04 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 103.993, 62.238, 70.998 |
Unit cell angles | 90.00, 118.52, 90.00 |
Refinement procedure
Resolution | 45.690 - 1.650 |
R-factor | 0.206 |
Rwork | 0.205 |
R-free | 0.23400 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.013 |
Data reduction software | DENZO |
Data scaling software | d*TREK (9.7L) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.680 | 45.680 | 1.710 |
High resolution limit [Å] | 1.650 | 3.550 | 1.650 |
Rmerge | 0.043 | 0.023 | 0.286 |
Total number of observations | 16747 | 13196 | |
Number of reflections | 47920 | ||
<I/σ(I)> | 13.9 | 46.1 | 2.9 |
Completeness [%] | 99.8 | 99.7 | 99.3 |
Redundancy | 3.35 | 3.37 | 2.79 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7 | 289 | 20% PEG 3350, 2M POTASSIUM FORMATE, pH 7, VAPOR DIFFUSION, temperature 289K |