Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DKA

Crystal structure of a dinb-like protein (yjoa, bsu12410) from bacillus subtilis at 2.30 A resolution

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL11-1
Synchrotron siteSSRL
BeamlineBL11-1
Temperature [K]100
Detector technologyCCD
Collection date2008-05-14
DetectorMARMOSAIC 325 mm CCD
Wavelength(s)0.91837,0.97956,0.97904
Spacegroup nameP 21 21 21
Unit cell lengths57.690, 63.340, 82.060
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.566 - 2.300
R-factor0.219
Rwork0.217
R-free0.26900
Structure solution methodMAD
RMSD bond length0.009
RMSD bond angle1.073
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHELX
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]29.56629.5702.380
High resolution limit [Å]2.3004.9302.300
Rmerge0.0970.0350.571
Number of reflections1359625622313
<I/σ(I)>7.318.51.58
Completeness [%]95.996.590.5
Redundancy3.63
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.62770.2000M NH4OAc, 30.0000% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon