Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DER

Crystal structure of dipeptide epimerase from Thermotoga maritima complexed with L-Ala-L-Lys dipeptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X4A
Synchrotron siteNSLS
BeamlineX4A
Temperature [K]100
Detector technologyCCD
Collection date2007-09-15
DetectorADSC QUANTUM 4
Wavelength(s)0.97915
Spacegroup nameP 61 2 2
Unit cell lengths190.690, 190.690, 283.106
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution24.990 - 1.900
R-factor0.231
Rwork0.231
R-free0.24400
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3deq
RMSD bond length0.005
RMSD bond angle1.300
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareBALBES
Refinement softwareCNS (1.1)
Data quality characteristics
 Overall
Low resolution limit [Å]25.000
High resolution limit [Å]1.900
Rmerge0.084
Number of reflections230926
Completeness [%]97.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.52933.0 M Sodium chloride, 0.1 M Sodium acetate trihydrate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon