3DDE
Crystal structure of a domain of unknown function with a heme oxygenase-like fold (sden_3740) from shewanella denitrificans os217 at 2.30 A resolution
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-03-16 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.91162,0.97932,0.97918 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 92.810, 66.000, 84.380 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.173 - 2.300 |
R-factor | 0.221 |
Rwork | 0.220 |
R-free | 0.25300 |
Structure solution method | MAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.340 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXD |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.173 | 2.380 | |
High resolution limit [Å] | 2.300 | 4.930 | 2.300 |
Rmerge | 0.041 | 0.020 | 0.433 |
Number of reflections | 23523 | 4407 | 3887 |
<I/σ(I)> | 12.6 | 32.4 | 1.9 |
Completeness [%] | 97.6 | 96.5 | 88.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 20.0% polyethylene glycol 3350, 0.269M magnesium nitrate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |