3DB0
Crystal structure of Putative Pyridoxamine 5'-phosphate oxidase (NP_472219.1) from LISTERIA INNOCUA at 2.00 A resolution
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL11-1 |
| Synchrotron site | SSRL |
| Beamline | BL11-1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2008-04-13 |
| Detector | MARMOSAIC 325 mm CCD |
| Wavelength(s) | 0.91837,0.97956,0.97908 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 92.160, 42.230, 62.020 |
| Unit cell angles | 90.00, 91.59, 90.00 |
Refinement procedure
| Resolution | 26.055 - 2.000 |
| R-factor | 0.185 |
| Rwork | 0.182 |
| R-free | 0.23900 |
| Structure solution method | MAD |
| RMSD bond length | 0.017 |
| RMSD bond angle | 1.725 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | SHELX |
| Refinement software | REFMAC (5.4.0067) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 26.055 | 26.060 | 2.070 |
| High resolution limit [Å] | 2.000 | 4.300 | 2.000 |
| Rmerge | 0.063 | 0.025 | 0.459 |
| Number of reflections | 16307 | 3130 | 2885 |
| <I/σ(I)> | 8.88 | 25.1 | 1.8 |
| Completeness [%] | 98.1 | 97.9 | 92.9 |
| Redundancy | 3.7 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.57 | 277 | 40.9% 1,2-propanediol, 0.1M sodium acetate pH 4.57, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K |
