3CFM
Crystal structure of the apo form of human wild-type transthyretin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU ULTRAX 18 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2005-05-10 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.542 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 43.169, 86.109, 63.764 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 17.870 - 1.600 |
R-factor | 0.192 |
Rwork | 0.191 |
R-free | 0.21800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1f41 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.057 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 86.109 | 17.870 | 1.690 |
High resolution limit [Å] | 1.600 | 5.060 | 1.600 |
Rmerge | 0.046 | 0.028 | 0.398 |
Total number of observations | 7253 | 30557 | |
Number of reflections | 32073 | ||
<I/σ(I)> | 8.9 | 16.7 | 1.9 |
Completeness [%] | 99.9 | 96.9 | 100 |
Redundancy | 6.9 | 6.6 | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | Mother liquor: 100 mM tris pH 7.5, 100 mM KCl, 20 % v/v PEG 400; drop 1 uL mother liquor + 1 uL TTR 10 mg/mL; crystals appeared in about 5 days, VAPOR DIFFUSION, HANGING DROP, temperature 291K |