3BGM
Crystal Structure of PKD2 Phosphopeptide Bound to Human Class I MHC HLA-A2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2007-04-02 |
Detector | SATURN |
Wavelength(s) | 1.5417 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.800, 54.800, 75.800 |
Unit cell angles | 90.00, 105.00, 90.00 |
Refinement procedure
Resolution | 19.630 - 1.600 |
R-factor | 0.203 |
Rwork | 0.202 |
R-free | 0.23200 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.308 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 20.000 | 1.700 | |
High resolution limit [Å] | 1.600 | 10.000 | 1.600 |
Rmerge | 0.033 | 0.022 | 0.441 |
Number of reflections | 59358 | 247 | 8355 |
<I/σ(I)> | 29.95 | 97.7 | 3.1 |
Completeness [%] | 96.0 | 85.8 | 81.7 |
Redundancy | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 17% PEG 8000, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |