Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3AGU

Hemerythrin-like domain of DcrH (semimet-R)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL26B1
Synchrotron siteSPring-8
BeamlineBL26B1
Temperature [K]100
Detector technologyCCD
Collection date2009-12-01
DetectorRIGAKU JUPITER 210
Wavelength(s)0.90
Spacegroup nameP 1
Unit cell lengths33.425, 44.903, 48.076
Unit cell angles95.21, 103.98, 89.95
Refinement procedure
Resolution20.000 - 1.805
Rwork0.247
R-free0.29210
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2awy
RMSD bond length0.010
RMSD bond angle1.228
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Refinement softwareREFMAC (refmac_5.5.0072)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0001.860
High resolution limit [Å]1.8001.800
Rmerge0.0720.358
Number of reflections24033
<I/σ(I)>16.2593.2
Completeness [%]97.495.6
Redundancy3.73.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.527724% (W/V) PEG4000, 0.2M CaCl2, 12% (V/V) isopropanol, 0.1M TrisHCl, pH 8.5, vapor diffusion, hanging drop, temperature 277K

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon