2YKQ
Structure of the human LINE-1 ORF1p trimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 90 |
Detector technology | CCD |
Collection date | 2009-06-21 |
Detector | MARMOSAIC 225 mm CCD |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 71.440, 91.640, 107.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.805 - 3.100 |
R-factor | 0.2418 |
Rwork | 0.239 |
R-free | 0.28620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB ENTRIES 2YKO AND 2W7A |
RMSD bond length | 0.002 |
RMSD bond angle | 0.472 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((PHENIX.REFINE)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 69.800 | 3.180 |
High resolution limit [Å] | 3.100 | 3.100 |
Number of reflections | 13318 | |
<I/σ(I)> | 11.3 | 2.2 |
Completeness [%] | 99.6 | 100 |
Redundancy | 3.6 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 8.5 | 100 MM TRIS-CL PH 8.5, 100 MM MG-ACETATE, 12 % PEG 8000 |