Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2YBP

JMJD2A COMPLEXED WITH R-2-HYDROXYGLUTARATE AND HISTONE H3K36me3 PEPTIDE (30-41)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyCCD
Collection date2010-07-24
DetectorADSC QUANTUM 315
Spacegroup nameP 21 21 2
Unit cell lengths101.291, 149.668, 57.319
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.510 - 2.020
R-factor0.201
Rwork0.201
R-free0.22500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ox0
RMSD bond length0.007
RMSD bond angle1.300
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareCNS (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.5102.060
High resolution limit [Å]2.0202.020
Rmerge0.0900.660
Number of reflections63521
<I/σ(I)>20.42.2
Completeness [%]98.797.2
Redundancy4.34.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.52770.1M CITRATE PH 5.5, 4 MM NICL2, 20% PEG 3350, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 277K.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon