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2Y77

Structure of Mycobacterium tuberculosis type II dehydroquinase complexed with (1R,4S,5R)-3-(benzo(b)thiophen-2-ylmethoxy)-1,4,5- trihydroxy-2-(thiophen-2-ylmethyl)cyclohex-2-enecarboxylate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM16
Synchrotron siteESRF
BeamlineBM16
Temperature [K]100
Detector technologyCCD
Collection date2009-11-20
DetectorADSC QUANTUM 210r
Spacegroup nameF 2 3
Unit cell lengths125.800, 125.800, 125.800
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 1.500
R-factor0.16244
Rwork0.161
R-free0.18388
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1h0s
RMSD bond length0.014
RMSD bond angle1.539
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.5.0109)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]31.5001.480
High resolution limit [Å]1.4001.400
Rmerge0.0600.400
Number of reflections30571
<I/σ(I)>7.52
Completeness [%]94.364.9
Redundancy7.51.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
17.533% (V/V) 2-METHYL-2, 4-PENTANEDIOL, 0.3 M AMMONIUM SULPHATE, 0.1 M HEPES-NAOH PH 7.5 50 MM TRIS-HCL PH 7.5, 1 MM 2-MERCAPTOETHANOL, 1 MM EDTA, 200 MM SODIUM CHLORIDE, 12.5 MM SODIUM (1R,4S,5R)- 3-(1-BENZOTHIOPHEN-2-YLMETHOXY)-1,4,5-TRIHYDROXY-2-(THIOPHEN- 2-YLMETHYL) CYCLOHEX-2-ENE-1-CARBOXYLATE.

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PDB entries from 2024-05-15

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