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2XTI

Asparaginyl-tRNA synthetase from Brugia malayi complexed with ATP:Mg and L-Asp-beta-NOH adenylate:PPi:Mg

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-3
Synchrotron siteESRF
BeamlineID14-3
Temperature [K]100
Detector technologyCCD
Collection date2003-11-13
DetectorADSC QUANTUM 4r
Spacegroup nameP 21 21 21
Unit cell lengths57.920, 106.390, 161.420
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.220 - 2.400
R-factor0.21606
Rwork0.213
R-free0.29837
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2xgt
RMSD bond length0.013
RMSD bond angle1.356
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.490
High resolution limit [Å]2.4002.400
Rmerge0.1000.420
Number of reflections38929
<I/σ(I)>103.3
Completeness [%]97.695.4
Redundancy3.63.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8.5ROOM TEMPERATURE HANGING-DROP VAPOUR DIFFUSION IN 0.1 M HEPES PH 8.5, 200MM SODIUM ACETATE USING 17-19 % PEG 4000 AS PRECIPITANT. PROTEIN CONCENTRATION OF 2.5MG/ML WITH 10 MM ATP:MGCL2, 10 MM L-ASP-BETA-NOH.

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PDB entries from 2024-05-15

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