2XDA
STRUCTURE OF HELICOBACTER PYLORI TYPE II DEHYDROQUINASE IN COMPLEX WITH INHIBITOR COMPOUND (4R,6R,7S)-2-(2-Cyclopropyl)ethyl-4,6,7- trihydroxy-4,5,6,7-tetrahydrobenzo(b)thiophene-4-carboxylic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-12-07 |
Detector | ADSC CCD |
Spacegroup name | P 42 3 2 |
Unit cell lengths | 99.640, 99.640, 99.640 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.000 - 1.850 |
R-factor | 0.18187 |
Rwork | 0.180 |
R-free | 0.20981 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2c4v |
RMSD bond length | 0.015 |
RMSD bond angle | 1.374 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.950 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.100 | 0.320 |
Number of reflections | 14986 | |
<I/σ(I)> | 4.9 | 2.4 |
Completeness [%] | 99.8 | 100 |
Redundancy | 38.9 | 39.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 6.2 | 50 MM TRIS-HCL PH 7.5 1 MM 2-MERCAPTOETHANOL 1 MM ETHYLENEDIAMINETETRAACETIC ACID 200 MM SODIUM CHLORIDE 12.5 MM (4R, 6R, 7S)- 2-(2-CYCLOPROPYL)ETHYL-4,6,7-TRIHYDROXY-4,5,6, 7-TETRAHYDROBENZO[B]THIOPHENE-4-CARBOXYLIC ACID 32% (W/V) POLYETHYLENEGLYCOL 4000 100 M SODIUM CITRATE PH 6.2 |