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2XB4

Crystal structures of zinc containing Adenylate kinase from Desulfovibrio gigas

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-2
Synchrotron siteESRF
BeamlineID14-2
Temperature [K]110
Detector technologyCCD
DetectorADSC QUANTUM 4
Spacegroup nameI 2 2 2
Unit cell lengths39.390, 119.440, 149.590
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution23.920 - 1.800
R-factor0.17967
Rwork0.178
R-free0.21152
Structure solution methodMAD
Starting model (for MR)NONE
RMSD bond length0.028
RMSD bond angle2.214
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwareautoSHARP
Refinement softwareREFMAC (5.5.0102)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]23.1901.850
High resolution limit [Å]1.8001.800
Rmerge0.0700.340
Number of reflections31474
<I/σ(I)>10.21.6
Completeness [%]99.595.5
Redundancy66
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
16.50.2 M TARTRATE NA/K, 0.1 M MES (PH 6.5) AND 20% PEG 2K OR 8K (THE PROTEIN:WELL SOLUTION RATIO IN THE DROP WAS 1:1, 1:2 OR 1:3 WITH THE FINAL DROP VOLUME OF 4, 6 OR 8 MICRO LITRE)

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PDB entries from 2025-02-05

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