2W9B
Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-F |
| Synchrotron site | APS |
| Beamline | 21-ID-F |
| Temperature [K] | 110 |
| Detector technology | CCD |
| Collection date | 2008-06-27 |
| Detector | MARRESEARCH |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 51.794, 101.776, 97.268 |
| Unit cell angles | 90.00, 91.95, 90.00 |
Refinement procedure
| Resolution | 28.750 - 2.280 |
| R-factor | 0.239 |
| Rwork | 0.239 |
| R-free | 0.25100 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2asd |
| RMSD bond length | 0.034 |
| RMSD bond angle | 3.200 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | MOLREP |
| Refinement software | CNS (1.2) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 28.750 | 2.420 |
| High resolution limit [Å] | 2.280 | 2.280 |
| Rmerge | 0.100 | 0.260 |
| Number of reflections | 45625 | |
| <I/σ(I)> | 10.3 | 3.8 |
| Completeness [%] | 96.4 | 89.7 |
| Redundancy | 3.9 | 6.8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | 7.4 | DPO4:DNA COMPLEX (1:1.2 MOLAR RATIO, 150 MICROMOLAR), 20 MM TRIS HCL (PH 7.4), 15% POLYETHYLENE GLYCOL 3350 (W/V), 60 MM SODIUM CHLORIDE, 5 MM MAGNESIUM CHLORIDE, 1 MM DGTP. |
