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2VLB

Structure of unliganded arylmalonate decarboxylase

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID14-3
Synchrotron siteESRF
BeamlineID14-3
Temperature [K]100
Detector technologyCCD
Collection date2006-09-15
DetectorADSC CCD
Spacegroup nameP 21 21 21
Unit cell lengths83.214, 100.988, 139.548
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.640 - 1.920
R-factor0.178
Rwork0.178
R-free0.20700
Structure solution methodSIRAS
Starting model (for MR)NONE
RMSD bond length0.018
RMSD bond angle1.403
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareAuto-Rickshaw
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0002.020
High resolution limit [Å]1.9201.920
Rmerge0.0600.430
Number of reflections89247
<I/σ(I)>15.32.2
Completeness [%]98.993.7
Redundancy4.62.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.2292HANGING-DROP VAPOUR-DIFFUSION SETUP WITH 0.5 ML RESERVOIR SOLUTION AT 292 K. DROPS COMPOSED OF 1 MICROLITER OF PROTEIN AND RESERVOIR SOLUTIONS EACH. PROTEIN SOLUTION CONTAINS 7-8 MG/ML AMDASE, 20 MM TRIS-HCL PH 8 AND 0.5 MM BETA-MERCAPTO ETHANOL. RESERVOIR SOLUTION CONTAINS 1.4-1.8 M NA/K PHOSPHATE PH 5.8-6.4.

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PDB entries from 2024-05-15

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