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2VIP

Fragment-Based Discovery of Mexiletine Derivatives as Orally Bioavailable Inhibitors of Urokinase-Type Plasminogen Activator

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RUH3R
Temperature [K]93
Detector technologyCCD
DetectorRIGAKU CCD
Spacegroup nameP 21 21 21
Unit cell lengths52.488, 54.382, 81.029
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution27.620 - 1.720
R-factor0.166
Rwork0.162
R-free0.23750
Structure solution methodOTHER
Starting model (for MR)NONE
Data reduction softwared*TREK
Data scaling softwared*TREK
Refinement softwareBUSTER-TNT (2.1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.6301.780
High resolution limit [Å]1.7201.720
Rmerge0.0600.300
Number of reflections20118
<I/σ(I)>2.1
Completeness [%]79.618
Redundancy2.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
16.6PROTEIN WAS CRYSTALLIZED FROM 22-24% PEG4000, 0.17M (NH4)2SO4, 15% GLYCEROL, 0.1M NA(CH3COO) PH=4.0; THEN SOAKED IN 0.01M COMPOUND, 28% PEG4000, 0.29M HEPES PH=6.6, 5% GLYCEROL, 0.001M NA(CH3COO), 0.001M (NH4)2SO4, 10% DMSO

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PDB entries from 2024-05-15

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