Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VBT

Riboflavin kinase Mj0056 from Methanocaldococcus jannaschii in complex with CDP and PO4

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyCCD
DetectorMARRESEARCH
Spacegroup nameP 43 21 2
Unit cell lengths77.720, 77.720, 106.868
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.700
R-factor0.211
Rwork0.209
R-free0.26600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2vbs
RMSD bond length0.014
RMSD bond angle1.476
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.3202.870
High resolution limit [Å]2.7002.700
Rmerge0.0800.920
Number of reflections9448
<I/σ(I)>16.572.02
Completeness [%]99.598.1
Redundancy5.55.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
140% V/V ETHYLENE GLYCOL, 100 MM PHOSPHATE-CITRATE PH 4.2, 200 MM NH4SO4

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon