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2R7V

Crystal Structure of Rotavirus SA11 VP1/RNA (GGCUUU) Complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2004-04-10
DetectorADSC QUANTUM 315
Wavelength(s)1.000
Spacegroup nameP 21 21 21
Unit cell lengths76.452, 112.311, 143.719
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 2.800
Rwork0.228
R-free0.27900
Structure solution methodMIRAS
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareSHARP
Refinement softwareCNS
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.900
High resolution limit [Å]2.8006.0302.800
Rmerge0.0650.0250.537
Number of reflections28572
<I/σ(I)>17.1
Completeness [%]91.499.747.6
Redundancy4.44.91.5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72851 microliter of VP1 at 10 mg/ml in 25 mM Na-HEPES, pH 7.8, 100 mM NaCl mixed with 2 microliter of crystallization buffer [25 mM Na-MES, pH 6.5, 1.5% (w/v) PEG 3350] and allowing the drop to equilibrate at 12 C by hanging-drop vapor diffusion with a well solution identical in composition to the drop except for the protein. With micro-seeding, thin, plate-like crystals appeared after 1 day and grew to full size in about two weeks., pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 285K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111Na-HEPES
211NaCl
312Na-MES
412PEG 3350

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PDB entries from 2025-12-10

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