2PZL
Crystal structure of the Bordetella bronchiseptica enzyme WbmG in complex with NAD and UDP
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SRS BEAMLINE PX14.1 |
| Synchrotron site | SRS |
| Beamline | PX14.1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2004-12-13 |
| Detector | ADSC QUANTUM 4 |
| Wavelength(s) | 1.488 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 191.226, 49.792, 75.912 |
| Unit cell angles | 90.00, 101.12, 90.00 |
Refinement procedure
| Resolution | 29.970 - 2.390 |
| R-factor | 0.18867 |
| Rwork | 0.186 |
| R-free | 0.23541 |
| Structure solution method | Single Wavelength |
| Starting model (for MR) | RELATED PDB ENTRY 2PZK WAS SOLVED BY MAD AND USED AS A STARTING MODEL. |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.593 |
| Data reduction software | DENZO |
| Data scaling software | SCALEPACK |
| Phasing software | PHENIX |
| Refinement software | REFMAC (5.2.0019) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 30.000 | 2.460 |
| High resolution limit [Å] | 2.390 | 2.400 |
| Rmerge | 0.103 | 0.328 |
| Number of reflections | 27549 | |
| <I/σ(I)> | 15 | 3.98 |
| Completeness [%] | 98.7 | 97.7 |
| Redundancy | 4.47 | 4.45 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 0.1 M Tris, 0.2 M MgCl2, 16-18 % (w/w) PEG 8000. UDP-glucose was added by soaking at 10 mM prior to cryoprotection. pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
