2PZ0
Crystal structure of Glycerophosphodiester Phosphodiesterase (GDPD) from T. tengcongensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2006-05-27 |
Detector | RIGAKU RAXIS IV |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.401, 53.608, 110.885 |
Unit cell angles | 90.00, 97.91, 90.00 |
Refinement procedure
Resolution | 10.000 - 1.910 |
Rwork | 0.229 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1o1z |
RMSD bond length | 0.010 |
RMSD bond angle | 1.160 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.950 |
High resolution limit [Å] | 1.910 | 1.910 |
Rmerge | 0.052 | 0.322 |
Number of reflections | 43433 | |
Completeness [%] | 99.6 | 98.8 |
Redundancy | 4.88 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1 M HEPES, 18% PEG4000, 10% iso-propanal, 0.05M CaCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K |