2PYW
Structure of A. thaliana 5-methylthioribose kinase in complex with ADP and MTR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X8C |
Synchrotron site | NSLS |
Beamline | X8C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2003-08-29 |
Detector | ADSC QUANTUM 4 |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 162.460, 82.240, 91.080 |
Unit cell angles | 90.00, 117.83, 90.00 |
Refinement procedure
Resolution | 80.580 - 1.900 |
R-factor | 0.16475 |
Rwork | 0.163 |
R-free | 0.19723 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2olc |
RMSD bond length | 0.014 |
RMSD bond angle | 1.380 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.580 | 1.970 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.045 | 0.175 |
Number of reflections | 82470 | |
<I/σ(I)> | 16.9 | 4.8 |
Completeness [%] | 98.7 | 90.8 |
Redundancy | 3.38 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 10% PEG8000, 0.1M sodium cacodylate, 0.2M magnesium acetate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K |