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2OLO

NikD, an unusual amino acid oxidase essential for nikkomycin biosynthesis: open form at 1.9A resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 14-BM-C
Synchrotron siteAPS
Beamline14-BM-C
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 4
Wavelength(s)0.90000
Spacegroup nameC 1 2 1
Unit cell lengths87.710, 90.570, 85.400
Unit cell angles90.00, 118.54, 90.00
Refinement procedure
Resolution50.000 - 1.900
Rwork0.184
R-free0.21200
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.970
High resolution limit [Å]1.9001.900
Rmerge0.0390.200
Number of reflections43421
<I/σ(I)>29.85
Completeness [%]92.860.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.7293100 mM MES buffer, 25-30% 2-methyl-2,4-pentanediol, pH 5.7, VAPOR DIFFUSION, SITTING DROP, temperature 293K

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PDB entries from 2025-12-10

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