2O55
Crystal Structure of a putative glycerophosphodiester phosphodiesterase from Galdieria sulphuraria
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-11-08 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97923, 0.96400 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 102.427, 102.427, 51.709 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.387 - 2.806 |
R-factor | 0.195 |
Rwork | 0.192 |
R-free | 0.25500 |
Structure solution method | MAD |
RMSD bond length | 0.014 |
RMSD bond angle | 1.486 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHARP |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.387 | 36.387 | 2.900 |
High resolution limit [Å] | 2.800 | 6.030 | 2.800 |
Rmerge | 0.099 | 0.076 | 0.197 |
Number of reflections | 7690 | ||
<I/σ(I)> | 15.064 | 4.527 | |
Completeness [%] | 97.4 | 99.6 | 82.5 |
Redundancy | 12.7 | 15.2 | 4.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Protein Solution (10 MG/ML protein, 0.050 M sodium chloride, 0.0031 M sodium azide, 0.0003 M TCEP, 0.005 M Bis Tris pH 7.0) mixed in a 1:1 ratio with the Well Solution (0.90 M lithium sulfate, 0.10 M sodium succinate pH 4), Cryoprotected with: well solution supplemented with up to 20% glycerol, vapor diffusion, hanging drop, temperature 293K |