2NX2
Crystal structure of protein ypsA from Bacillus subtilis, Pfam DUF1273
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X3A |
Synchrotron site | NSLS |
Beamline | X3A |
Temperature [K] | 100 |
Detector technology | CCD |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.9793 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 51.052, 51.052, 138.220 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.890 - 2.000 |
R-factor | 0.182 |
Rwork | 0.180 |
R-free | 0.22400 |
Structure solution method | SIRAS |
RMSD bond length | 0.013 |
RMSD bond angle | 1.308 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHELXD |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.090 | 0.441 |
Number of reflections | 13121 | |
<I/σ(I)> | 26.5 | 2.95 |
Completeness [%] | 99.9 | 100 |
Redundancy | 12.6 | 5.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 298 | 18 % PEG-4K, Na-Acetate pH 4.6, Ammonium Acetate 0.1M, 0.1M, Ethylene Glycol 10%, Vapor diffusion, Sitting drop, temperature 298K |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 298 | 18 % PEG-4K, Na-Acetate pH 4.6, Ammonium Acetate 0.1M, 0.1M, Ethylene Glycol 10%, Vapor diffusion, Sitting drop, temperature 298K |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 298 | 18 % PEG-4K, Na-Acetate pH 4.6, Ammonium Acetate 0.1M, 0.1M, Ethylene Glycol 10%, Vapor diffusion, Sitting drop, temperature 298K |