2NW3
Crystal structure of HLA-B*3508 presenting EBV peptide EPLPQGQLTAY at 1.7A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2003-03-04 |
Detector | RIGAKU RAXIS |
Wavelength(s) | 1.502 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.832, 81.661, 110.328 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.010 - 1.700 |
R-factor | 0.203 |
Rwork | 0.201 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zsd |
RMSD bond length | 0.013 |
RMSD bond angle | 1.442 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.653 | 22.210 | 1.790 |
High resolution limit [Å] | 1.700 | 5.380 | 1.700 |
Rmerge | 0.046 | 0.029 | 0.404 |
Total number of observations | 6325 | 25600 | |
Number of reflections | 50052 | ||
<I/σ(I)> | 11 | 15.7 | 1.9 |
Completeness [%] | 97.7 | 97.7 | 94.9 |
Redundancy | 3.8 | 3.6 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 277 | 0.2M Ammonium acetate, 0.1M Cacodylate (pH7.7), 16% PEG 3350, pH 7.6, vapor diffusion, hanging drop, temperature 277K |