2IH5
Crystal structure of the adenine-specific DNA methyltransferase M.TaqI complexed with the cofactor analog AETA and a 10 bp DNA containing an abasic site analog at the target base partner position
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-3 |
Synchrotron site | ESRF |
Beamline | ID14-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-05-13 |
Detector | ADSC QUANTUM 4 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.890, 69.630, 114.370 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.820 - 1.800 |
R-factor | 0.16329 |
Rwork | 0.161 |
R-free | 0.20196 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1g38 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.479 |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.830 | 1.900 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.082 | 0.427 |
Number of reflections | 44043 | |
<I/σ(I)> | 12.54 | 3.4 |
Completeness [%] | 97.7 | 96.6 |
Redundancy | 4.31 | 4.37 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.3 | 298 | 3 microliters crystallization buffer (10 mM Tris/HCl, 300 mM NaCl, pH 7.3) containing the complex plus 1 microliter reservoir solution (100 mM KCl, 100 mM MgCl2, 6% isopropanol, 50 mM sodium cacodylate, pH 6.0), VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | Tris/HCl | ||
10 | 1 | 2 | isopropanol | ||
11 | 1 | 2 | sodium cacodylate | ||
12 | 1 | 2 | H2O | ||
2 | 1 | 1 | NaCl | ||
3 | 1 | 1 | KCl | ||
4 | 1 | 1 | MgCl2 | ||
5 | 1 | 1 | isopropanol | ||
6 | 1 | 1 | sodium cacodylate | ||
7 | 1 | 1 | H2O | ||
8 | 1 | 2 | KCl | ||
9 | 1 | 2 | MgCl2 |