2IFU
Crystal Structure of a Gamma-SNAP from Danio rerio
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2006-08-24 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97926 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 83.378, 90.813, 264.173 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.053 - 2.600 |
R-factor | 0.24 |
Rwork | 0.239 |
R-free | 0.26100 |
Structure solution method | MAD |
RMSD bond length | 0.017 |
RMSD bond angle | 1.469 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | SHARP |
Refinement software | REFMAC (5.2.0005) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.053 | 40.050 | 2.460 |
High resolution limit [Å] | 2.400 | 5.920 | 2.400 |
Rmerge | 0.093 | 0.068 | 0.568 |
Number of reflections | 70210 | ||
<I/σ(I)> | 11.759 | 1.19 | |
Completeness [%] | 88.3 | 98.5 | 53.4 |
Redundancy | 9.8 | 11.3 | 3.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | Protein Solution (10 MG/ML protein, 0.250 M sodium chloride, 0.0031 M sodium azide, 0.0003 M TCEP, 0.005 M BisTris pH 7.0) mixed in a 1:1 ratio with the Well Solution (15% PEG 8K, 0.020 M lithium sulfate, 0.066 M PIPES pH 6.5, 0.034 M MOPS pH 7.0) Cryoprotected with Well Solution supplemented with up to 25% ethylene glycol, vapor diffusion, hanging drop, temperature 277K | |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | Protein Solution (10 MG/ML protein, 0.250 M sodium chloride, 0.0031 M sodium azide, 0.0003 M TCEP, 0.005 M BisTris pH 7.0) mixed in a 1:1 ratio with the Well Solution (15% PEG 8K, 0.020 M lithium sulfate, 0.066 M PIPES pH 6.5, 0.034 M MOPS pH 7.0) Cryoprotected with Well Solution supplemented with up to 25% ethylene glycol, vapor diffusion, hanging drop, temperature 277K |