2I5A
Crystal structure of a DB1055-D(CGCGAATTCGCG)2 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU200 |
Temperature [K] | 105 |
Detector technology | IMAGE PLATE |
Collection date | 2006-07-17 |
Detector | RIGAKU RAXIS IV |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.145, 39.842, 65.794 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 8.000 - 1.650 |
R-factor | 0.201 |
Rwork | 0.201 |
R-free | 0.28700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dbe |
RMSD bond length | 0.008 |
RMSD bond angle | 0.027 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | SHELXL-97 |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 1.710 |
High resolution limit [Å] | 1.650 | 1.650 |
Rmerge | 0.035 | 0.219 |
Number of reflections | 7580 | |
<I/σ(I)> | 33.42 | 4.8 |
Completeness [%] | 93.1 | 90.7 |
Redundancy | 2.91 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | 7 | MAGNESIUM CHLORIDE, DNA DODECAMER, MPD, COMPOUND DB 1055, SODIUM CACODYLATE BUFFER, pH 7, VAPOR DIFFUSION, HANGING DROP, pH 7.00 |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | MAGNESIUM CHLORIDE | ||
2 | 1 | 1 | MPD | ||
3 | 1 | 1 | SODIUM CACODYLATE BUFFER | ||
4 | 1 | 1 | HOH | ||
5 | 1 | 2 | MAGNESIUM CHLORIDE | ||
6 | 1 | 2 | MPD | ||
7 | 1 | 2 | SODIUM CACODYLATE BUFFER | ||
8 | 1 | 2 | HOH |