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2HD1

Crystal structure of PDE9 in complex with IBMX

Replaces:  1TBM
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS BEAMLINE X12C
Synchrotron siteNSLS
BeamlineX12C
Temperature [K]100
Detector technologyCCD
DetectorADSC QUANTUM 4
Wavelength(s)1.1
Spacegroup nameP 41 21 2
Unit cell lengths103.513, 103.513, 269.727
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.230
Rwork0.215
R-free0.23100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)PDE4
RMSD bond length0.006
RMSD bond angle1.200
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (1.0)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.000
High resolution limit [Å]2.2302.230
Rmerge0.0720.489
Number of reflections70925
<I/σ(I)>27.83
Redundancy6.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5277The protein drops contain 3 microl PDE9A2-IBMX complex and 1 microl well buffer of 0.1 M HEPES, 2.2 M Na formate, and 5% xylitol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-05-15

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