2DSB
Crystal structure of human ADP-ribose pyrophosphatase NUDT5
Experimental procedure
Experimental method | MAD |
Source type | SYNCHROTRON |
Source details | BSRF BEAMLINE 3W1A |
Synchrotron site | BSRF |
Beamline | 3W1A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-01-02 |
Detector | MARRESEARCH |
Wavelength(s) | 0.9794, 0.9797, 0.9819 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.717, 70.316, 87.629 |
Unit cell angles | 90.00, 100.41, 90.00 |
Refinement procedure
Resolution | 35.550 - 2.500 |
R-factor | 0.214 |
Rwork | 0.214 |
R-free | 0.26200 |
Structure solution method | MAD |
RMSD bond length | 0.007 |
RMSD bond angle | 1.300 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | SOLVE |
Refinement software | CNS (1.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.070 | |
Number of reflections | 32826 | |
<I/σ(I)> | 20.1 | |
Completeness [%] | 96.3 | 81.2 |
Redundancy | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 277 | 25% 2-methyl-2,4-pentanediol, 0.16M sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 277 | 25% 2-methyl-2,4-pentanediol, 0.16M sodium acetate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |