29LP
PanDDA analysis - Crystal structure of the Ubiquitin conjugating enzyme 4 from Leishmania major (LmUbC4) in complex with Z1428159350
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2024-07-12 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 0.921344 |
| Spacegroup name | H 3 2 |
| Unit cell lengths | 115.928, 115.928, 154.953 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 61.340 - 2.161 |
| R-factor | 0.2639 |
| Rwork | 0.262 |
| R-free | 0.30180 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.870 |
| Data reduction software | xia2 |
| Data scaling software | xia2 |
| Phasing software | DIMPLE |
| Refinement software | BUSTER (2.10.4 (23-JAN-2024)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 84.320 | 2.200 |
| High resolution limit [Å] | 2.160 | 2.160 |
| Number of reflections | 21692 | 1871 |
| <I/σ(I)> | 14.3 | 0.2 |
| Completeness [%] | 100.0 | 99.8 |
| Redundancy | 20.5 | |
| CC(1/2) | 1.000 | 0.260 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 294 | 3.1 M NaCl, 0.1 M MES/imid pH 6.5, 20% glycerol |
