1KT2
CRYSTAL STRUCTURE OF CLASS II MHC MOLECULE IEK BOUND TO MOTH CYTOCHROME C PEPTIDE
Experimental procedure
実験手法 | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X4A |
Synchrotron site | NSLS |
Beamline | X4A |
Temperature [K] | 100 |
Detector technology | STORAGE PHOSPHORS |
Collection date | 1996-01-01 |
Detector | CUSTOM-MADE |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
格子定数 [Å] | 147.790, 56.930, 115.990 |
格子定数 [度] | 90.00, 92.12, 90.00 |
精密化法
残基 | 20.000 * - 2.800 |
R因子 | 0.221 * |
Rwork | 0.220 |
R-free | 0.29300 * |
Structure solution method | MOLECULAR REPLACEMENT |
結合長の平均二乗偏差(RMSD) [Å] | 0.007 |
結合角の平均二乗偏差(RMSD) [度] | 0.397 * |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS (1.0) |
Quality characteristics
Overall | Outer shell | |
分解能 [Å] (低) | 20.000 | 2.950 |
分解能 [Å] (高) | 2.800 | 2.800 |
Rmerge_l_obs | 0.097 * | 0.317 * |
独立反射数 | 22827 | 3185 * |
完全性 [%] | 95.2 | 93.4 |
冗長性 | 2.5 * |
結晶化条件
結晶ID | 方法 | pH | 温度 | 溶液条件 |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 * | 298 | PEG4000, 2-propanol, sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
文献の結晶化試薬
ID | 結晶ID | 溶液 | 試薬名 | 濃度 (単位) (単位) | 詳細 |
1 | 1 | drop | protein | 11 (mg/ml) | |
2 | 1 | reservoir | PEG4000 | 12 (%) | |
3 | 1 | reservoir | 2-propanol | 12 (%) | |
4 | 1 | reservoir | sodium acetate | 60 (mM) | pH5.5 |